Translational Genomics Research Institute: Glioblastoma Multiforme (GBM) Orthotopic Xenograft Transcriptome

This dataset contains the mRNA transcriptional profiles of 39 human primary glioblastoma orthotopic xenografts.

Experimental Approaches

The expression study was performed on the Agilent-014580 Whole Human Genome Microarray 4 X44K G4112F (GPL6480). This multi-pack (4X44K) formatted microarray represents a compiled view of the human genome as it is understood today. The sequence information used to design this product was derived from a broad survey of well-known sources such as RefSeq, Goldenpath, Ensembl, Unigene, and others. The resulting view of the human genome covers 41,000 unique genes and transcripts which have been verified and optimized by alignment to the human genome assembly and by Agilent's Empirical Validation process. The full raw data files are deposited in GEO (series GSE38814). The .gct matrix file contains log2 transformed, lowess normalized, and probe level expression values for each xenograft.

If you have additional questions please email Gil Speyer.


Access the CTD2 Data Portal.

Last updated: July 01, 2017