CGCI Data Matrix

Last Updated: February 23, 2021

CGCI data matrix is being continuously updated as new data from ongoing projects become available. See "How to Navigate the CGCI Data Matrix" for details on different types of available CGCI data. 

The Genomic Data Commons (GDC) is currently working on developing their whole genome sequencing (WGS) analysis pipeline. While some CGCI analyzed WGS data is already available via the GDC Data Portal, not all aliquots have completed the analysis phase. The CGCI aliquots that are currently still undergoing WGS analysis at the GDC are listed here: https://ocg.cancer.gov/file/cgciwgsaliquotsunderanalysisatgdcxlsx

Disease Patient Data Gene Expression Copy Number Methylation miRNA Sequence Other
Burkitt's Lymphoma (BLGSP) - Ongoing
Burkitt's Lymphoma (BLGSP)
mRNA-seq
Whole Genome
miRNA-seq
Whole Genome
mRNA-seq
Targeted Resequencing
HIV+ Tumor Molecular Characterization Project (HTMCP) - Ongoing
HIV+ Diffuse Large B-Cell Lymphoma (HTMCP-DLBCL)
Clinical File
Sample Matrix
Pathology Images
mRNA-seq
Whole Genome
miRNA-seq
Whole Genome
mRNA-seq
Targeted Resequencing
HIV+ Cervical Cancers (HTMCP-CC)
mRNA-seq
Whole Genome
Methylation array
miRNA-seq
Whole Genome
mRNA-seq
Targeted Resequencing
ChIP-seq
HIV+ Lung Cancers (HTMCP-LC)
Clinical File
Sample Matrix
mRNA-seq
Whole Genome
miRNA-seq
Whole Genome
mRNA-seq
Targeted Resequencing
Non-Hodgkin's Lymphoma (NHL) - Completed
Diffuse Large B-Cell Lymphoma (NHL-DLBCL)
Clinical File
Sample Matrix
mRNA-seq
Whole Genome
Whole Genome
mRNA-seq
Whole Exome
Follicular Lymphoma (NHL-FL)
Clinical File
Sample Matrix
mRNA-seq
Whole Genome
Whole Genome
mRNA-seq
Whole Exome

Projects and assays with available information or data are hyperlinked

Patient Data:
Clinical File
Sample Matrix
Pathology Images
Gene Expression:
mRNA-seq
Copy Number:
Whole Genome
miRNA:
miRNA-seq
Sequence:
Whole Genome
mRNA-seq
Targeted Resequencing
Other:
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
mRNA-seq
Copy Number:
Whole Genome
miRNA:
miRNA-seq
Sequence:
Whole Genome
mRNA-seq
Targeted Resequencing
Other:
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Copy Number:
Whole Genome
miRNA:
Other:
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Copy Number:
Whole Genome
miRNA:
Other: