TARGET Data Matrix

Last Updated: May 09, 2018
For all projects experimental methods please see the TARGET Banner TARGET Experimental Methods Page TARGET Banner
Disease Patient Data Gene Expression Copy Number Methylation miRNA Sequence Other
Acute Lymphoblastic Leukemia (ALL)
ALL Phase I
Clinical File
Sample Matrix
Affymetrix U133 Plus 2
DCC Open*
Affymetrix SNP 500k
DCC Open*
DCC Controlled†
Whole Genome
View cases*
FASTQ/BAM†
DCC Controlled†
Whole Genome Lite
View cases*
FASTQ/BAM†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
Sequence Trace Linking Table†
125 Genes*
Kinome
Kinome Linking Table†
113 genes*
ALL Phase II
Clinical File
Sample Matrix
Affymetrix U133 Plus 2
DCC Open*
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
NimbleGen HELP
DCC Open*
miRNA-seq
FASTQ/BAM†
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Acute Myeloid Leukemia (AML)
AML
Clinical File
Sample Matrix
Affymetrix Gene ST
DCC Open*
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Illumina Infinium 27k
DCC Open*
miRNA-seq
FASTQ/BAM†
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
FASTQ/BAM†
DCC Open*
DCC Controlled†
Kidney Tumors
Wilms Tumor (WT)
Clinical File
Clinical File†
Sample Matrix
Affymetrix U133 Plus 2
DCC Open*
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Illumina Infinium 450k
DCC Open*
miRNA-seq
FASTQ/BAM†
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
FASTQ/BAM†
DCC Open*
DCC Controlled†
Clear Cell Sarcoma of the Kidney (CCSK)
Clinical File
Clinical File†
Sample Matrix
Affymetrix U133 Plus 2
DCC Open*
Affymetrix SNP 6.0
DCC Open*
DCC Controlled †
Illumina Infinium 450k
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Rhabdoid Tumor (RT)
Clinical File
Clinical File†
Sample Matrix
mRNA-seq
FASTQ/BAM†
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Bisulfite-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
miRNA-seq
FASTQ/BAM†
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
ChIP-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Model Systems (MDLS)
NBL Model Systems
Clinical File
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Pediatric Preclinical Testing Program (PPTP)
Sample Matrix
Agilent SurePrint G3; Affymetrix U133 Plus 2
DCC Open*
Affymetrix SNP6 Illumina Omni5
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
Neuroblastoma (NBL)
NBL
Clinical File
Sample Matrix
Affymetrix Exon ST
DCC Open*
DCC Controlled†
Illumina 550k SNP
DCC Open*
DCC Controlled†
Illumina Infinium 450k
DCC Open*
miRNA-seq
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
Sequence Trace Linking Table†
116 genes*
Osteosarcoma (OS)
OS
Clinical File
Sample Matrix
Affymetrix Exon ST
DCC Open*
DCC Controlled†
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Illumina Infinium 450k
DCC Open*
MegaPlex TaqMan
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*

Projects and assays with available information or data are hyperlinked

ALL Phase I
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Affymetrix U133 Plus 2
DCC Open*
Copy Number:
Affymetrix SNP 500k
DCC Open*
DCC Controlled†
Methylation:
MiRNA:
Sequence:
Whole Genome
View cases*
FASTQ/BAM†
DCC Controlled†
Whole Genome Lite
View cases*
FASTQ/BAM†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
Sequence Trace Linking Table†
125 Genes*
Other:
Kinome
Kinome Linking Table†
113 genes*
ALL Phase II
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Affymetrix U133 Plus 2
DCC Open*
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Methylation:
NimbleGen HELP
DCC Open*
MiRNA:
miRNA-seq
FASTQ/BAM†
DCC Open*
Sequence:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other:
ALL Phase 3
Patient Data:
Gene Expression:
Copy Number:
Methylation:
MiRNA:
Sequence:
Other:
AML
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Affymetrix Gene ST
DCC Open*
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Methylation:
Illumina Infinium 27k
DCC Open*
MiRNA:
miRNA-seq
FASTQ/BAM†
DCC Open*
Sequence:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other:
Wilms Tumor (WT)
Patient Data:
Clinical File
Clinical File
Sample Matrix
Gene Expression:
Affymetrix U133 Plus 2
DCC Open*
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Methylation:
Illumina Infinium 450k
DCC Open*
MiRNA:
miRNA-seq
FASTQ/BAM†
DCC Open*
Sequence:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other:
Clear Cell Sarcoma of the Kidney (CCSK)
Patient Data:
Clinical File
Clinical File
Sample Matrix
Gene Expression:
Affymetrix U133 Plus 2
DCC Open*
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled †
Methylation:
Illumina Infinium 450k
DCC Open*
MiRNA:
Sequence:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other:
Rhabdoid Tumor (RT)
Patient Data:
Clinical File
Clinical File
Sample Matrix
Gene Expression:
mRNA-seq
FASTQ/BAM†
DCC Open*
Copy Number:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Methylation:
Bisulfite-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
MiRNA:
miRNA-seq
FASTQ/BAM†
DCC Open*
Sequence:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other:
ChIP-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
NBL Model Systems
Patient Data:
Clinical File
Gene Expression:
Copy Number:
Methylation:
MiRNA:
Sequence:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other:
Pediatric Preclinical Testing Program (PPTP)
Patient Data:
Sample Matrix
Gene Expression:
Agilent SurePrint G3; Affymetrix U133 Plus 2
DCC Open*
Copy Number:
Affymetrix SNP6 Illumina Omni5
DCC Open*
DCC Controlled†
Methylation:
MiRNA:
Sequence:
Whole Exome
FASTQ/BAM†
DCC Open*
*
Other:
NBL
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Affymetrix Exon ST
DCC Open*
DCC Controlled†
Copy Number:
Illumina 550k SNP
DCC Open*
DCC Controlled†
Methylation:
Illumina Infinium 450k
DCC Open*
MiRNA:
miRNA-seq
Sequence:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other:
Targeted Resequencing
Sequence Trace Linking Table†
116 genes*
OS
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Affymetrix Exon ST
DCC Open*
DCC Controlled†
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Methylation:
Illumina Infinium 450k
DCC Open*
MiRNA:
MegaPlex TaqMan
DCC Open*
Sequence:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
Other: