TARGET Data Matrix

Last Updated: November 01, 2018
DNA Helix with bullseye target. Links to TARGET Homepage TARGET Program
Link to instructions on how to use the data Using TARGET Data
Link to Procedures and Methods TARGET Methods
Pediatric Resource Pediatric Resource
Disease Patient Data Gene Expression Copy Number Methylation miRNA Sequence Other
Acute Lymphoblastic Leukemia (ALL)
ALL Phase I (B-ALL)
Clinical File
Sample Matrix
Affymetrix U133 Plus 2
DCC Open*
Affymetrix SNP 500k
DCC Open*
DCC Controlled†
Whole Genome
DCC Controlled†
FASTQ/BAM†
View Cases*
Whole Genome Lite
FASTQ/BAM†
View Cases*
mRNA-seq
DCC Controlled†
FASTQ/BAM†
DCC Open*
Targeted Resequencing
Sequence Trace Linking Table†
125 Genes*
Kinome
113 Genes*
Kinome Linking Table†
ALL Phase II (B-ALL, T-ALL, Dicentric, Xenograft)
Clinical File
Sample Matrix
Affymetrix U133 Plus 2
DCC Open*
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
NimbleGen HELP
DCC Open*
miRNA-seq
DCC Open*
FASTQ/BAM†
Whole Genome
DCC Controlled†
FASTQ/BAM†
DCC Open*
Whole Exome
DCC Controlled†
FASTQ/BAM†
DCC Open*
mRNA-seq
DCC Controlled†
FASTQ/BAM†
DCC Open*
ALL Phase 3 (ALAL)
Clinical File
Sample Matrix
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
miRNA-seq
DCC Open*
FASTQ/BAM†
Whole Genome
DCC Controlled†
FASTQ/BAM†
DCC Open*
mRNA-seq
DCC Controlled†
FASTQ/BAM†
DCC Open*
Acute Myeloid Leukemia (AML)
AML
Clinical File
Sample Matrix
Affymetrix Gene ST
DCC Open*
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Illumina Infinium 27k
DCC Open*
miRNA-seq
DCC Open*
FASTQ/BAM†
Whole Genome
DCC Controlled†
FASTQ/BAM†
DCC Open*
Whole Exome
DCC Controlled†
FASTQ/BAM†
DCC Open*
mRNA-seq
DCC Controlled†
FASTQ/BAM†
DCC Open*
Targeted Resequencing
DCC Controlled†
FASTQ/BAM†
DCC Open*
Kidney Tumors
Wilms Tumor (WT)
Clinical File
Clinical File†
Sample Matrix
Affymetrix U133 Plus 2
DCC Open*
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Illumina Infinium 450k
DCC Open*
miRNA-seq
DCC Open*
FASTQ/BAM†
Whole Genome
DCC Controlled†
FASTQ/BAM†
DCC Open*
Whole Exome
DCC Controlled†
FASTQ/BAM†
DCC Open*
mRNA-seq
DCC Controlled†
FASTQ/BAM†
DCC Open*
Targeted Resequencing
DCC Controlled†
FASTQ/BAM†
DCC Open*
Clear Cell Sarcoma of the Kidney (CCSK)
Clinical File
Clinical File†
Sample Matrix
Affymetrix U133 Plus 2
DCC Open*
Affymetrix SNP 6.0
DCC Open*
DCC Controlled †
Illumina Infinium 450k
DCC Open*
Whole Genome
DCC Controlled†
FASTQ/BAM†
DCC Open*
mRNA-seq
DCC Controlled†
FASTQ/BAM†
DCC Open*
Rhabdoid Tumor (RT)
Clinical File
Clinical File†
Sample Matrix
mRNA-seq
FASTQ/BAM†
DCC Open*
Whole Genome
DCC Open*
DCC Controlled†
FASTQ/BAM†
Bisulfite-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
miRNA-seq
DCC Open*
FASTQ/BAM†
Whole Genome
DCC Controlled†
FASTQ/BAM†
DCC Open*
mRNA-seq
DCC Controlled†
FASTQ/BAM†
DCC Open*
ChIP-seq
DCC Open*
DCC Controlled†
FASTQ/BAM†
Model Systems (MDLS)
NBL Model Systems
Clinical File
Whole Genome
DCC Controlled†
FASTQ/BAM†
DCC Open*
Whole Exome
DCC Controlled†
FASTQ/BAM†
DCC Open*
Pediatric Preclinical Testing Program (PPTP)
Sample Matrix
Agilent SurePrint G3; Affymetrix U133 Plus 2
DCC Open*
Affymetrix SNP6 Illumina Omni5
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
Neuroblastoma (NBL)
NBL
Clinical File
Sample Matrix
Affymetrix Exon ST
DCC Controlled†
DCC Open*
Illumina 550k SNP
DCC Open*
DCC Controlled†
Illumina Infinium 450k
DCC Open*
miRNA-seq
Whole Genome
DCC Controlled†
FASTQ/BAM†
DCC Open*
Whole Exome
DCC Controlled†
FASTQ/BAM†
DCC Open*
mRNA-seq
DCC Controlled†
FASTQ/BAM†
DCC Open*
Targeted Resequencing
DCC Controlled†
FASTQ/BAM†
DCC Open*
Targeted Resequencing
116 Genes*
Sequence Trace Linking Table†
Osteosarcoma (OS)
OS
Clinical File
Sample Matrix
Affymetrix Exon ST
DCC Controlled†
DCC Open*
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Illumina Infinium 450k
DCC Open*
MegaPlex TaqMan
DCC Open*
Whole Genome
DCC Controlled†
FASTQ/BAM†
DCC Open*
Whole Exome
DCC Controlled†
FASTQ/BAM†
DCC Open*
mRNA-seq
FASTQ/BAM†
DCC Open*

Projects and assays with available information or data are hyperlinked

ALL Phase I (B-ALL)
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Affymetrix U133 Plus 2
DCC Open*
Copy Number:
Affymetrix SNP 500k
DCC Open*
DCC Controlled†
Methylation:
MiRNA:
Sequence:
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
125 Genes*
Sequence Trace Linking Table†
Whole Genome
FASTQ/BAM†
View Cases*
DCC Controlled†
Whole Genome Lite
View Cases*
FASTQ/BAM†
Other:
Kinome
113 Genes*
Kinome Linking Table†
ALL Phase II (B-ALL, T-ALL, Dicentric, Xenograft)
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Affymetrix U133 Plus 2
DCC Open*
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Methylation:
NimbleGen HELP
DCC Open*
MiRNA:
miRNA-seq
DCC Open*
FASTQ/BAM†
Sequence:
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other:
ALL Phase 3 (ALAL)
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Methylation:
MiRNA:
miRNA-seq
DCC Open*
FASTQ/BAM†
Sequence:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other:
AML
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Affymetrix Gene ST
DCC Open*
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Methylation:
Illumina Infinium 27k
DCC Open*
MiRNA:
miRNA-seq
DCC Open*
FASTQ/BAM†
Sequence:
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other:
Wilms Tumor (WT)
Patient Data:
Sample Matrix
Clinical File
Clinical File
Gene Expression:
Affymetrix U133 Plus 2
DCC Open*
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Methylation:
Illumina Infinium 450k
DCC Open*
MiRNA:
miRNA-seq
DCC Open*
FASTQ/BAM†
Sequence:
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other:
Clear Cell Sarcoma of the Kidney (CCSK)
Patient Data:
Sample Matrix
Clinical File
Clinical File
Gene Expression:
Affymetrix U133 Plus 2
DCC Open*
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled †
Methylation:
Illumina Infinium 450k
DCC Open*
MiRNA:
Sequence:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other:
Rhabdoid Tumor (RT)
Patient Data:
Sample Matrix
Clinical File
Clinical File
Gene Expression:
mRNA-seq
DCC Open*
FASTQ/BAM†
Copy Number:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Methylation:
Bisulfite-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
MiRNA:
miRNA-seq
DCC Open*
FASTQ/BAM†
Sequence:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other:
ChIP-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
NBL Model Systems
Patient Data:
Clinical File
Gene Expression:
Copy Number:
Methylation:
MiRNA:
Sequence:
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other:
Pediatric Preclinical Testing Program (PPTP)
Patient Data:
Sample Matrix
Gene Expression:
Agilent SurePrint G3; Affymetrix U133 Plus 2
DCC Open*
Copy Number:
Affymetrix SNP6 Illumina Omni5
DCC Open*
DCC Controlled†
Methylation:
MiRNA:
Sequence:
Whole Exome
*
DCC Open*
FASTQ/BAM†
Other:
NBL
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Affymetrix Exon ST
DCC Open*
DCC Controlled†
Copy Number:
Illumina 550k SNP
DCC Open*
DCC Controlled†
Methylation:
Illumina Infinium 450k
DCC Open*
MiRNA:
miRNA-seq
Sequence:
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Targeted Resequencing
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other:
Targeted Resequencing
116 Genes*
Sequence Trace Linking Table†
OS
Patient Data:
Clinical File
Sample Matrix
Gene Expression:
Affymetrix Exon ST
DCC Open*
DCC Controlled†
Copy Number:
Affymetrix SNP 6.0
DCC Open*
DCC Controlled†
Methylation:
Illumina Infinium 450k
DCC Open*
MiRNA:
MegaPlex TaqMan
DCC Open*
Sequence:
mRNA-seq
DCC Open*
FASTQ/BAM†
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Other: