The Genomic Data Commons (GDC) is currently working on developing their whole genome sequencing (WGS) analysis pipeline. While some TARGET analyzed WGS data is already available via the GDC Data Portal, not all aliquots have completed the analysis phase. The TARGET aliquots that are currently still undergoing WGS analysis at the GDC are listed here:

Disease Patient Data Gene Expression Copy Number Methylation miRNA Sequence Other
Acute Lymphoblastic Leukemia (ALL)
ALL Phase 1 (B-ALL)
ALL Phase 2 (B-ALL, T-ALL, Dicentric, Xenograft)
ALL Phase 3 (ALAL)
Acute Myeloid Leukemia (AML)
Kidney Tumors
Wilms Tumor (WT)
Clear Cell Sarcoma of the Kidney (CCSK)
Rhabdoid Tumor (RT)
Neuroblastoma (NBL)
Osteosarcoma (OS)
Pan-cancer Model Systems (MDLS)
NBL Model Systems
Pediatric Preclinical Testing Program (PPTP)

Projects and assays with available information or data are hyperlinked